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bio-retrieveassemblies

biobash

biopy

bior

To save some R scripts used for biology data analysis

chimsim

ChimSim: Chimeric transcripts simulator

emp

Code repository of the Earth Microbiome Project.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

ezmap

genedb

一个中文基因数据库 面向专业人员也面向普通大众

genometester4

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.

hangzhouyunqi2017ppt

krona

Interactively explore metagenomes and more from a web browser.

meta-pipe

Supplementary information to the Meta-pipe article

metameta

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

metapore

MetaPORE – Chiu Laboratory, University of California, San Francisco

midas

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

mpd-c

Multiplex Primer Design

mycollab

An open source, free, high performance, stable and secure Java Application Business Platform of Project Management, CRM and Document

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

pan-genome-visualization

pecaller

map and call next generation genomic sequencing

psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

repark

Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree with the FLI-LICENSE included in the package.

scripts

scripts from pixelbeat.org

silva-138_classifiers

Classifiers trained on different variable regions of Prokaryotic 16S rRNA genes

surpi

SURPI

tools-microbiome-analysis

A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization

trup

Tumor-specimen suited RNA-seq Unified Pipeline