biopzhang Goto Github PK

biopzhang.github.io

A personal website

calcium_resp_charge

commot

cython_tutorial

datasharing

The Leek group guide to data sharing

dialib-qc

DIALib-QC, an assessment tool for the systematic evaluation of spectral assay libraries to improve the data independent acquisition analysis.

flare

RNA edit detection (SAILOR) and peak calling (FLARE)

forceatlas2

Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX

glide-text2im

GLIDE: a diffusion-based text-conditional image synthesis model

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

margaret

Metric learning-based graph-partitioned trajectory inference from single-cell data

neuraltalk2

Efficient Image Captioning code in Torch, runs on GPU

pyresp

qtools

qtools has helper functions to submit jobs to compute clusters (PBS and SLURM) from within Python

reference_1000g

Process 1000G phase3 data as a reference for various populations.

reinforcement-learning

Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.

software-development

A primer on software development best practices for computational chemistry

velocyto.py

RNA velocity estimation in Python

via

vmd_visualization