Comments (2)
Handling msgpack
as a soft dependency following approach used for the mmtf-python
dependency for MMTF format seems very reasonable.
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Tagging @JoaoRodrigues (Bio.PDB maintainer)
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Related Issues (20)
- Entrez egquery example doctest breaking HOT 4
- Inefficient indexing into `Bio.Align.substitution_matrices.Array` during `pairwise2` alignment HOT 3
- Bio.Align.Alignment doesn't contain chromosome data? HOT 1
- Calculating HSE with missing atoms on Gly
- [feature] Phylo: miter settings when drawing trees HOT 1
- [bug] Phylo: tree and label will be very crowded when branch number is huge HOT 2
- [Help Request] Migrating from pairwise2 -> PairwiseAligner
- [feature] Phylo: get color from comment in nexus file
- Blank altlocs in duplicate residue ILE (' ', 105, ' ') HOT 1
- [Typo] Tutorial - Section 4.3.2.3 HOT 3
- default matrix HOT 2
- Multiple Genbank structured comment warnings
- `Blast.NCBIWWW.qblast` should return the `rid` of the submitted query to the caller HOT 2
- GC content for RNA sequences HOT 2
- PDBIOException re-raised ValueError with obfuscating message HOT 3
- output of Phylo.Consensus.strict_consensus depends on the order of trees in the input HOT 1
- How to get the gap/mismatch positions of alignment HOT 2
- The process for specifying Entrez.cache is unclear HOT 3
- BiopythonDeprecationWarning in Bio.pairwise2 HOT 4
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