biopig Goto Github PK

bioinformatic-resources

biopig.github.io

bol_pangenome

bsr_pipeline

a pipeline of BSR-seq, without parents information

chip-seq.snakemake

that is the script of chip-seq analysis use the snakemake workflow

clca_wgs

cmwtat_digital_edition

CloudMoe Windows 10/11 Activation Toolkit get digital license, the best open source Win 10/11 activator in GitHub. GitHub 上最棒的开源 Win10/Win11 数字权利（数字许可证）激活工具！

comparetranscriptome

repository of scripts for comparative transcriptome analysis

dna_snakemake

dumpnice

Codes for Vmap1.1 and Vmap3

eqtl-analysis

Expression quantitative traits locus analysis using EMMAX software

eqtl_xgboost

genome-assemble-and-annotation

基因组组装注释流程及脚本

ggcor-1

ggcor备用源，版权归houyunhuang所有，本源仅供应急使用

ggvolcano

The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient color volcano plot(`gradual_volcano`) and GO term volcano plot(`term_volcano`).

gitc2024feb-rnaseq

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwas

Genome-wide Association Study (GWAS) Tutorial

ilus

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

maize_eqtl

a set of data and scripts to perform eQTL mapping in MAGIC RILs

medicago_ruthenica_genome

microbiomestatplot

Interpretation and visualization of microbiome charts

mirna-eqtl-manuscript

msa

mumandco

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

my_scripy

asfa

normalizegenecounts

Takes raw counts and normalize to CPM, RPKM or TPM

organelle-related-scripts.

python perl R

panz-sv-pipe

Structure variants calling and genotyping scripts for pan-Zea

picaplot

An R package for visualization of Principal / Independent Component Analysis.