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Biomage Org's Projects

api icon api

The API for Cellenics, staying in between the UI and the backends (worker, pipeline)

data-scripts icon data-scripts

Scripts to demultiplex or pre-process user data to get into Cellenics.

fetchngs icon fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

iac icon iac

Cellenics Infrastructure as Code and GitOps repository.

pipeline icon pipeline

The Cellenics pipeline project for dependency-managed work processing.

rnaflow icon rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

scrnaseq icon scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

ui icon ui

Front-end for Cellenics

vitessce icon vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

website icon website

Source repository for Biomage's website

worker icon worker

k8s worker that executes R code for experiments.

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