Comments (3)
Cheers! Restarting pipeline.
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Now released to pypi
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Just looked at this; in the gaf at my end the TS28 was not removed from the EMAPA term, it was removed from the MA term.
I Still got an error from Jenkins (and the cherry script, which says there was white space still), so I removed the TS28 from the EMAPA also, and after resubmitting, there were no errors (just the usual warnings).
The curator is redoing the annotations and I will have a new gaf tomorrow to send through the pipeline to test.
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Related Issues (20)
- Unknown GAF qualifier/relation breaks parser HOT 1
- get_minimal_subgraph gives "RecursionError: maximum recursion depth exceeded"
- ModuleNotFoundError: No module named ‘ontobio.graph_io'
- Emit creation-date on Evidence individuals HOT 1
- error in gocamgen HOT 1
- Obsolete GO term with no replacement breaks with/from validation HOT 2
- pyparsing upgrade causes AttributeError HOT 1
- ogr bug? HOT 1
- loading local json files fails HOT 1
- ontobio output to obograph?
- Cannot render subgraphs using GraphRenderer
- GO-CAM translation should convert 'transports or maintains localization of' and other relations HOT 3
- "category" field in Token should be "categories"
- Converting GPAD to GAF can result in blank evidence codes if no ECO-to-GAF mapping exists HOT 2
- Use gaf-eco-mapping-derived.txt in EcoMap in GpadParser and GafWriter HOT 2
- EcoMap should parse eco.owl as ontology HOT 1
- enrichment_test() function not returning anything
- Import breaks on >=Python3.7 because of dataclasses package HOT 1
- sqlite3.DatabaseError: file is not a database
- ontobio pull request failing workflow actions due to Monarch HOT 1
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