Git Product home page Git Product logo

Comments (5)

cmungall avatar cmungall commented on June 15, 2024

There are two types of document in the solr index, entity-oriented and association-oriented. The former uses 'category', the latter '{subject,object}_category'. The counts for the latter should be accurate. the former may only be implemented for searching a subset of types, @kshefchek ?

from ontobio.

lhannest avatar lhannest commented on June 15, 2024

Looks good, thanks.

from ontobio.

kshefchek avatar kshefchek commented on June 15, 2024

I get an error when trying to replicate:
"msg":"undefined field: "category"",

I don't believe this is in the monarch solr schema, which solr server are you using?

from ontobio.

lhannest avatar lhannest commented on June 15, 2024

@kshefchek I'm using version 0.2.11 of ontobio.

Chris' suggestion seems to be correct:

results = GolrAssociationQuery(
    rows=0,
    facet_fields=['subject_category', 'object_category']
).exec()
facet_counts = results['facet_counts']
return jsonify(facet_counts)

Which produces:

{
"object_category": {
"anatomy": 1325778,
"biological process": 870753,
"case": 29237,
"disease": 438822,
"family": 22759,
"gene": 13382523,
"genotype": 1239754,
"model": 24848,
"pathway": 300028,
"phenotype": 8589086,
"variant": 7487546
},
"subject_category": {
"case": 21592,
"disease": 273984,
"gene": 8908453,
"genotype": 1471295,
"model": 681489,
"pathway": 1928772,
"publication": 13326444,
"variant": 7099105
}
}

from ontobio.

cmungall avatar cmungall commented on June 15, 2024

from ontobio.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.