bioinfotongli Goto Github PK

2023_embl_rome_training

matreial for EMBO Rome image analysis training

apoc

Accelerated Pixel and Object Classifiers (APOC)

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

basicpy

baysor

Bayesian Segmentation of Spatial Transcriptomics Data

bfautofocus

a Micro-Manager plugin to find physical cell z-focus plane with transmitted-light microscopy images

bfseg

bioinfotongli.github.io

Code that'll help you kickstart a personal website that showcases your work as a software developer.

bs_meta

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

cellh5

CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.

codeocean-webatlas

conf_notes

Share knowledges about the conferences that I have attended

containers

deepblink

Threshold independent detection and localization of diffraction-limited spots.

deeplearning4j

Deeplearning4j, ND4J, DataVec and more - deep learning & linear algebra for Java/Scala with GPUs + Spark

dl4j-test-resources

Repo for the test data used in dl4j's tests. This is meant to be a standalone repo so this repo is only used during tests

feature_reg

Feature based registration for fluorescence microscopy images

footmark

I leave no trace of wings in the air, but I am glad I have had my flight.

fractal-tasks-core

Main tasks for the Fractal analytics platform

framecombiner

gaps

A Genetic Algorithm-Based Solver for Jigsaw Puzzles :cyclone:

generate_fake_anchor_channels

hcs_analysis

icy-micromanager

Micro Manager plugin for Icy

ilastik

ilastik-shell, applets, and workflows to string them together.

image_registrator

imagepy

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

jupyter-omeroanalysis-desktop

Run OMERO clients in a Linux desktop using Jupyter

kt_simul

Python model of chromosome movements during mitosis in Fission Yeast