Related Issues (20)
- [Question] How to correctly use ILR with balance tree basis? HOT 5
- Gneiss Maximum Recursion Depth Error
- TODO:
- Getting None/NaN values in columns from `gneiss.composition.ilr_transform` HOT 2
- Sign change in ilr_transform results using new dependencies HOT 3
- pvalues disagree between interactive plot
- numerator cutoff is slightly off in proportion_plot HOT 2
- phyloseq support HOT 1
- Update the pip and bioconda version 0.4.4 to require skbio ≥ 0.5.1 instead of == 0.5.1 HOT 3
- Balance test HOT 1
- Tutorials for proportion plots
- Proportionality test HOT 1
- Faster random_linkage method
- Compatiability with xarray
- Renaming clades HOT 1
- BUG: match appears to be broken with biom tables
- Faster hierarchical clustering
- match and match_tips functions are deprecated
- ImportError: cannot import name 'balanceplot' HOT 2
- Numpy 1.24 incompatibility
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