Some important containers to be created about containers HOT 10 CLOSED

added proteowizard

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spectraST is part of TPP, should we create a separate container for it ?

from containers.

I guess comet also and still has its own container. 

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-------- Original message --------
From: Felipe Leprevost [email protected]
Date: 25/05/2016 17:26 (GMT+00:00)
To: BioDocker/containers [email protected]
Cc: Yasset Perez-Riverol [email protected], Author [email protected]
Subject: Re: [BioDocker/containers] Some important containers to be created
(#47)

spectraST is part of TPP, should we create a separate container for it ?

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from containers.

yes that's true, what I meant was that SpectraTS is shipped as part of TPP,
I'm not sure if we can download the software as an independent binary, like
comet is.

On Wed, May 25, 2016 at 12:57 PM Yasset Perez-Riverol <
[email protected]> wrote:

I guess comet also and still has its own container.

Sent from my Samsung device

-------- Original message --------
From: Felipe Leprevost [email protected]
Date: 25/05/2016 17:26 (GMT+00:00)
To: BioDocker/containers [email protected]
Cc: Yasset Perez-Riverol [email protected], Author <
[email protected]>
Subject: Re: [BioDocker/containers] Some important containers to be
created (#47)

spectraST is part of TPP, should we create a separate container for it ?

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#47 (comment)

from containers.

I guess should be possible to pack it outside.

from containers.

Hi guys!

I need to deploy and use PennCNV on our clusters here. This involves some fun with Perl and dependencies. Would it make sense to make a Biocontainer (or, to call it the German way, Biotonne)?
I was thinking it is a good way to try the submission and deposition system by newbies not very good with a computer (like me)?

@ypriverol sorry, missed you yesterday, but would be nice to have a chat one of these days :)

from containers.

Hi Marc, 100% in the direction of making the docker container. Please let us know if you need any help. I'm now working in the docker registry that will make more visible all of our containers. Marc, Harald is also trying to make SearchGUI and peptideShacker works in Biodocker. Please, give a hand to him.

We can talk or chat where ever you want.

Regards
Yasset

from containers.

Yes we have been working on having SearchGUI and PeptideShaker compatible but thought you were happy with our latest improvements?

from containers.

See this BioContainers/specs#45

from containers.

SpectraST is available via TPP container
Fido is available via Crux container
Proteowizard and Percolator were added last month

from containers.