Build an assay element to work from my own normalized count matrix about summarizedexperiment HOT 5 CLOSED

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Thanks,
H.

from summarizedexperiment.

You can create a SummarizedExperiment through the standard constructor passing any matrix as the assay argument. Is this what you mean?

mock:

> mat = matrix(1:20, nrow=5)
> SummarizedExperiment(assays = mat)
class: SummarizedExperiment 
dim: 5 4 
metadata(0):
assays(1): ''
rownames: NULL
rowData names(0):
colnames: NULL
colData names(0):

from summarizedexperiment.

Thanks a lot lshep, I'll try it, I think this is what I need....

from summarizedexperiment.

Thanks lshep, that's what I need, I'll try to pass my matrix with that....

from summarizedexperiment.

@ramarquezo No problem but as @hpages said next time please use the support.bioconductor.org site for these types of questions.

from summarizedexperiment.