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asteria

atacama-soil-microbiome-tutorial

bacdiving

Bacdiving accesses the Bacterial Diversity Metadatabase BacDive and provides various visualization options.

bacteria-archaea-traits

A synthesis of bacterial and archaeal phenotypic trait data

bio-datascience.github.io

This is the repository for our group's webpage

brain_challenge

Network Analysis and Sex Prediction Based on Whole Brain Connectome

c-lasso

c-lasso: a Python package for constrained sparse regression and classification

causal_microbiome_tutorial

Causal inference framework for environment-microbiome data applied to American Gut data.

cmap4r

R package to download, visualize, and process data from the Simons CMAP (https://cmap.readthedocs.io/en/latest/) database.

coda24

Course website mini-course

comp-iv

Collection of methods for instrumental variable settings with a compositional cause.

deepregression

Fitting Semi-Structured Deep Distributional Regression in R

drug-interactions-hcs

fast-latent-correlation

Code to reproduce results in paper "Fast computation of latent correlations"

gglasso

Implementations for solving the Group and Fused Graphical Lasso problem

global-rrna-univeral-metabarcoding-of-plankton

A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.

lassonet

An implementation of LassoNet for arbitrary network architectures.

latentcor

lounsbery

metaibs

Meta-analysis of microbiome composition measured by 16S rRNA seq in IBS case-control studies

microbial-interactions

msys_minireview

nbfar

netcomi

Network Comparison for Microbial Compositional Data

normcorr-manuscript

Code and data for reproducing NormCorr manuscript

omd

Code for ocean mover's distance (OMD) project.

overoptimism-microbiome

pde-stride

This repository contains codes and data-sets for the PDE inference from limited spatio-temporal data

pertpy

Perturbation Analysis in the scverse ecosystem.

prodg