Comments (1)
Is there an example that can be posted publicly?
The test at https://github.com/BigDataBiology/macrel/tree/master/tests/contigs
should test for these behaviours
from macrel.
Related Issues (20)
- conda install -c bioconda macrel not working HOT 1
- Redirect log information
- macrel peptides - version problems HOT 4
- input file: macrel.out.all_orfs.faa vs macrel.out.smorfs.faa HOT 1
- UserWarning: Trying to unpickle estimator DecisionTreeClassifier HOT 1
- clustering macrel's output HOT 2
- Retrain Macrel model? HOT 2
- Fix macrel on very short peptides
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- Consider using `pyrodigal` for small ORFs detection HOT 1
- running problem HOT 1
- paladin issue while running macrel abundance HOT 2
- The prediction input file problem HOT 1
- If RNA metagenome sequence or transcriptosome raw data can be used for macrel analysis HOT 4
- No prediction output when using macrel reads HOT 5
- AttributeError: module 'pyrodigal' has no attribute 'OrfFinder' HOT 1
- tmp file does not exist error HOT 2
- ModuleNotFoundError: No module named '_sysconfigdata_x86_64_conda_linux_gnu' HOT 4
- what does CLP and CDP mean in the results? HOT 3
- ModuleNotFoundError: No module named '_sysconfigdata_x86_64_conda_linux_gnu' HOT 5
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