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chrisgorgo avatar chrisgorgo commented on August 18, 2024

This indeed looks like a bug. Thanks for reporting!
On Jan 5, 2016 1:22 PM, "John Pellman" [email protected] wrote:

I have a fieldmap JSON at the root of a BIDS directory. This JSON contains
a "Units" field to be inherited by nested NifTIs with the optional
"IntendedFor" field omitted. I've tried two file names for the fieldmap
JSON, neither of which seem to work: ses-NFB3_fieldmap.json and
fieldmap.json.

1: You have to define 'Units' for this file. (code: 17)
/sub-A00037112/ses-NFB3/fmap/sub-A00037112_ses-NFB3_fieldmap.nii.gz
/sub-A00038998/ses-NFB3/fmap/sub-A00038998_ses-NFB3_fieldmap.nii.gz
/sub-A00052181/ses-NFB3/fmap/sub-A00052181_ses-NFB3_fieldmap.nii.gz
/sub-A00052340/ses-NFB3/fmap/sub-A00052340_ses-NFB3_fieldmap.nii.gz
/sub-A00054504/ses-NFB3/fmap/sub-A00054504_ses-NFB3_fieldmap.nii.gz
/sub-A00054857/ses-NFB3/fmap/sub-A00054857_ses-NFB3_fieldmap.nii.gz
/sub-A00054914/ses-NFB3/fmap/sub-A00054914_ses-NFB3_fieldmap.nii.gz
/sub-A00055121/ses-NFB3/fmap/sub-A00055121_ses-NFB3_fieldmap.nii.gz
/sub-A00055373/ses-NFB3/fmap/sub-A00055373_ses-NFB3_fieldmap.nii.gz
/sub-A00055446/ses-NFB3/fmap/sub-A00055446_ses-NFB3_fieldmap.nii.gz
/sub-A00055447/ses-NFB3/fmap/sub-A00055447_ses-NFB3_fieldmap.nii.gz
/sub-A00055738/ses-NFB3/fmap/sub-A00055738_ses-NFB3_fieldmap.nii.gz
/sub-A00056452/ses-NFB3/fmap/sub-A00056452_ses-NFB3_fieldmap.nii.gz
/sub-A00057005/ses-NFB3/fmap/sub-A00057005_ses-NFB3_fieldmap.nii.gz
/sub-A00057035/ses-NFB3/fmap/sub-A00057035_ses-NFB3_fieldmap.nii.gz
/sub-A00057182/ses-NFB3/fmap/sub-A00057182_ses-NFB3_fieldmap.nii.gz

1: This file is not part of the BIDS specification, make sure it isn't included in the dataset by accident. >Data derivatives (processed data) should be placed in /derivatives folder. (code: 1)
/ses-NFB3_fieldmap.json
Evidence: ses-NFB3_fieldmap.json

—
Reply to this email directly or view it on GitHub
https://github.com/INCF/bids-validator/issues/69.

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chrisgorgo avatar chrisgorgo commented on August 18, 2024

Could you try this branch and see if you still get this error? https://github.com/chrisfilo/bids-validator/tree/fix/topLevelFieldmaps

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