Comments (8)
perhaps we could start with some "alpha" releases of the current codebase?
from bids-matlab.
I'd be happy with @robertoostenveld's suggestion, because the current version is what I've been using for a specific project, so having it archived for reproducibility purposes makes sense for this project. That said, I don't mind archiving a fork.
from bids-matlab.
I ended up creating a forked release, since I was under some time pressure. This is fine for now, since it's for a preprint. But for updated versions of my project down the line it would be good to refer to the main bids-matlab
repo. So I'd say, from my current perspective, something cleaner would be fine at a later stage (a couple of months from now).
from bids-matlab.
FYI: there a CITATION.cff file in the dev
branch that was added by #284.
After #287 is merged in master I will make a first release that should hopefully be picked by zenodo and give us a DOI.
Will close this once #287 is merged.
from bids-matlab.
hey @jsheunis
"Having releases" is on the agenda though the issue was that the API is not yet completely decided (AFAICT). See that other post: #20 (comment)
Things are set up to get our releases DOI minted on zenodo but we don't have a version 0.0.0 yet. The problem (as I understand it) is that with an underdefined API we might "iterate" through major version changes faster than my sleep debt accumulates because it would make backward compatibility very "brittle".
@gllmflndn @robertoostenveld
I had literally just put "milestone and release date" as topic to discuss on the agenda for next week. Let me know what you think
from bids-matlab.
What is your deadline for this?
At the last meeting we said we could do a quick and dirty, but we could try to have something cleaner if we have a later due date.
from bids-matlab.
OK that gives time to deliver something a bit less "alpha".
from bids-matlab.
There is a first tagged release:
And a DOI on zenodo:
from bids-matlab.
Related Issues (20)
- Add example in copy to derivative help
- gzipped source files interfering with 'force'=false when copying
- NMIND certif
- Failure to read a specific json file should be more explicit
- Better handing of file dependendies
- Add a bids.to_table function
- index content of phenotype folder HOT 1
- Files with no ses entity in a ses folder not indexed when relying on schema HOT 2
- [BUG] Crash during processing empty subject folder HOT 3
- [BUG] Unexpexted warning during error report with missing `participants.json` on Windows HOT 7
- [ENH]: Incorporate json manipulation into bids.File class HOT 1
- improve error message when folder to index does not exist
- tsvwrite writes non-compliant tsvs when a table is provided HOT 1
- tsvwrite does not write datetimes in bids-compliant format
- TODO: check if tsvwrite can handle datetime data HOT 2
- improve bids.schema API HOT 1
- Test that bids model with nodes and edges in the wrong order
- inheritance principle bug: no more than one file per level allowed
- improve performance
- Resolve bids URI to full path when indexing explicit dependencies
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