Comments (3)
dyf
commented on August 20, 2024
This query downloads all of the structures in the structure ontology this atlas uses:
http://api.brain-map.org/api/v2/data/Structure/query.json?criteria=[graph_id$eq1]&num_rows=2000
Each record looks like this:
{
"acronym": "eps",
"atlas_id": 690,
"color_hex_triplet": "CCCCCC",
"depth": 2,
"failed": false,
"failed_facet": 734881840,
"graph_id": 1,
"graph_order": 1218,
"hemisphere_id": 3,
"id": 1000,
"name": "extrapyramidal fiber systems",
"neuro_name_structure_id": null,
"neuro_name_structure_id_path": null,
"ontology_id": 1,
"parent_structure_id": 1009,
"safe_name": "extrapyramidal fiber systems",
"sphinx_id": 1219,
"st_level": 2,
"structure_id_path": "/997/1009/1000/",
"structure_name_facet": 738013408,
"weight": 8690
}The one you care about for colors is color_hex_triplet. The id field is what you'll find in the annotation volume.
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dyf
commented on August 20, 2024
Ah sorry, I see there is a separate issue for creating the color table -- replicating my comment there.
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jcfr
commented on August 20, 2024
Closing. Duplicated of #10
Following last discussion, we will not generated 3d models and will not enable volume rendering
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Related Issues (20)
- Program cannot run on your PC HOT 1
- Make Edit the default interaction mode.
- Update QA checklist to capture identified regression
- Update CHANGES file
- Simplify and harden the annotation file format. HOT 2
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- Toggle rendering of markup labels.
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- Is there a difference between a LIMS json blob those save directly to file? HOT 1
- Add structure id and acronym to JSON HOT 6
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- change hard-coded kind parameter to default that can be overriden by a command line argument HOT 1
- Documentation published on readthedocs is not current HOT 12
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