Name: Brett Olivier
Type: User
Company: @SystemsBioinformatics @PySCeS @sbmlteam @vu-rdm-tech
Bio: Biochemist, Research Software Engineer, Data Steward (@SystemsBioinformatics, @sbmlteam, @PySCeS, @vu-rdm-tech).
Twitter: Brett_Olivier
Location: Amsterdam
Blog: http://teusinkbruggemanlab.nl/brett-olivier/
Brett Olivier's Projects
Tools for generating publication reports for AIMMS based on PURE output
Work with BagIt packages from Python.
CBMPy is a Python based platform for constraint based modelling and analysis.
Depdency configuration scripts
CBMPy internal development tools
Documentation for CBMPy
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Template models for MetaDraft
CBMPy test suite
A web-based curation tool for genome scale, constraint-based models
Keeping track of international data champions initives
FROG analysis in python for the reproducibility of FBC models
Version Control with Git
A Go library for accessing and using SQLite databases on DBHub.io
This repository contains the the human writable (text-based) serialization of a subset of DataCite 4.4 elements.
The official PySCeS project source code repository.
A Python API for iRODS
My SBML spec development area
(Work in progress) A new, modern version of the SBML.org website
The specification documents for SBML.
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks