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Benedikt Brink's Projects

bcbb icon bcbb

Incubator for useful bioinformatics code, primarily in Python and R

covernant icon covernant

COVERnant - A tool to generate and manipulate coverage plots of high-throughput sequencing data.

ddpcrclust icon ddpcrclust

A package for automated quantification of non-orthogonal, multiplexed ddPCR data

ddpcrvis icon ddpcrvis

An interactive, web based GUI for the ddPCRclust algorithm. It was developed using the web application framework Shiny.

flowcut icon flowcut

Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis.

hicsuntdracones icon hicsuntdracones

HiC sunt dracones - or HiCsd in short - Your little helper for the HiC analysis

juicer icon juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

phenocomb icon phenocomb

An R package for combinatorial analysis of phenotypes

smalr icon smalr

SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

zumis icon zumis

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

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