bfrgoncalves Goto Github PK

add_file_identifier

allele_calling

ani_calculator

This program performs a given ANI method (ANIb or ANIm) on a set of input files or downloads a group of files by syncronizing to ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by searching for the DOWNLOADTOKEN

bi_calculator

Belonging Index Calculator

boxplot_from_matrix

bsr_calculator

bsrvsnucsimilarity

Plots the BSR and nucleotide similarity after n generations

coreaccviz

data-downloader

Nextflow pipeline to download files using axel

enteromstree

filter_files_by_table_columns

find_brig_gaps

This program searches for alignment gaps in the scratch .tab files given as output of the BRIG software. BLAST hits on those files are ordered and then regions from the reference without coverage are classified as Gaps.

goeburst

goeBURST

hackathon_bath

innuendo_docker

Docker-compose for INNUENDO Platform deployment

innuendo_files

files required for innuendo configuration

innuendo_process_controller

INNUENDO Process controller source code wiht integration with Nextflow

innuendo_rest_api

Frontend application and REST API for the INNUENDO Platform

innuendo_schemas

repository for the INNUENDO chewbbaca schemas

insaflu_compose

Docker-compose version of the INSaFLU platform

learning-webgl

Some samples by the instructional video from Erick Moller

missingdata

msa

Modular BioJS compoment for a multiple sequence alignment

mutational-signature-nf

neighbourgenes

This program checks for the neighbor genes by syncing and downloading files from ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria/ and by peeforming BLASTp searches.

new_progenviz

node.js-stuff

online-phyloviz

ordercontigs_nucmer

This program performs a NUCmer alignment of a set of query sequence files (.fasta) against a reference and returns a set of files with the contigs ordered, in a .tab format.

patlas

Plasmid Atlas