Comments (3)
bernatgel
commented on July 24, 2024
1
Hi Johannes,
Actually, the transcripts do not overlap other transcripts (or at least should not) but the transcript positioning algorithm does not take into account the labels. This is something I've been meaning to add for quite some time, but had no time in the last few months. I'm adding this to the TODO list.
Thanks for the suggestion :)
Bernat
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dstern
commented on July 24, 2024
It would be great if this issue could be addressed for kpPlotGenes as well. I have two small neighboring genes and the gene labels overlap.
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bernatgel
commented on July 24, 2024
Yes, thisis one of karyoploteR's most pressing issues. Gene/transcript label overlaps and gene/transcript associated issues. I'll try to work it out in the next few months, although if anyone has any code to contribute, I'll be glad to test and merge it!
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Related Issues (20)
- How to get labels to not overlap other chromosomes? HOT 2
- How to get plot name? HOT 2
- kpBars will not change colors! HOT 2
- some blocks are lacking in kpRect function HOT 2
- plots bams that have no "chr" HOT 2
- Blue bands on ideogram HOT 1
- How to use karyoploteR for non-model species? HOT 1
- Change y-axis values
- How would I use kpLines with kpPlotGenes? HOT 1
- kpPlotGenes: Overlapping gene names margin increase HOT 3
- plotting bedgraph data for all chromosome at once HOT 6
- highlighting telomeres (adding custom symbols to chromosome ends) HOT 3
- Error in graphics::par HOT 3
- Borders of chromosomes in plot type 6 are not all the same HOT 1
- installation fail HOT 1
- CNV heatmap clustering and metadata HOT 1
- Overlapping labels and huge gap between them HOT 1
- Individual Colors for Histone Tracks HOT 5
- kpAddCytobandLabels with custom genome and cytoband file fails HOT 3
- kpHeatmap Fails when only one y value that is not 1
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