berebolledo Goto Github PK

alualucnvpredictor

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

awesome-bio-datasets

awesome-bio-datasets

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

bafcalculator

B-allele frequency calculator from WES data

bcc2020

berebolledo.github.io

Boris Rebolledo Jaramillo's personal website

bioinfinvrepro

repositorio de apuntes y código del curso "Introducción a la bioinformática e investigación reproducible para análisis genéticos"

bioinformagic

School and work projects

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bionitio

Demonstrating best practices for bioinformatics command line tools

bootcamp-central

PSU bootcamp on reproducible research

breast-cancer-risk-prediction

Classification of Breast Cancer diagnosis Using Support Vector Machines

cgs-local-ancestry

Local ancestry analysis pipeline for Stanford Clinical Genome Service and Undiagnosed Disease Network

checkvcf

Sanity check Variant Call Format (VCF) files.

cosifer

COSIFER - COnSensus Interaction Network InFErence Service

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dnm-finder

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwas

Scripts for GWAS association and metaanalysis

hmzdelfinder

CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

mity

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

mlehaplo

Maximum Likelihood Estimation for Viral Populations

mtdna22q

novoplasty

NOVOPlasty - The organelle assembler and heteroplasmy caller

phylorelatives