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analyse-rna-seq

annotate_my_genomes

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

arpir

Automatic RNA-Seq Pipelines with Interactive Report

bagoftricks

A collection of python and bash scripts for various bioinformatics-related tasks

bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

bioinformatic-resources

common

Scripts to automate myself out of a job!

curated_reference_databases

This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)

deeptools

Tools to process and analyze deep sequencing data.

genome_assembly_and_annotation

Anolis distichus Genome Assembly and Annotation

genomics_adventure

Workshop on Genomics - Genomics Adventure

htseq-tools

This repository hosts scripts and tools for analysis of high throughput sequencing data.

jupyter-notebooks

Data visualizations created with Matplotlib

miscellaneous

Useful scripts and Bash commant for a dailly work with OMICS data

python_visualization_tutorial

A comprehensive guide of how to make publication-ready figures in python

structural-annotation

structureddata

Machine Learning and Time series analysis with Tabular Data

teachingdemos

Bioinformatics related demos and tutorials using the R programming language

workshop-genome_annotation_elixir

genome annotation course within ELIXIR