ben-arnold Goto Github PK

13beaches

Repository for source code for the data management and primary analysis of the study funded by NIH grant R03-HD076066 to the University of California, Berkeley.

al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

antibody-curves

Scripts to conduct all of the analyses for the PLOS NTDs article entitled: Measuring changes in transmission of neglected tropical diseases, malaria, and enteric pathogens from quantitative antibody levels

coastalkenya-multiplex

Scripts to conduct analyses for a multiplex antibody study collected in coastal Kenya in 2015

enterics-seroepi

Data and computational notebooks to support the paper entitled Enteropathogen antibody dynamics and force of infection among children in low-resource settings

floods-bangladesh

Research projects assessing impacts of flooding on health in Bangladesh

gamexample-simulci

Example of simultaneous CI estimation around a spline in a GAM model, with and without clustered obs

mbita-schisto

Fine scale heterogeneity in schistosomiasis transmission estimated through antibody response

mordor-antibody

Analysis of multiplex antibody endpoints in the MORDOR Niger trial

optimal-recall

Scripts to run all of the analyses in the article: Optimal recall period for caregiver-reported illness in risk factor and intervention studies, AJE, 2013; 177(4):361-370. https://www.ncbi.nlm.nih.gov/pubmed/23364878

pairedttest_201804

A lesson on the paired t test

quantab-annecy

serosurveillance-cambodia

Serologic surveillance of population immunity and disease transmission in Cambodia

swift-spatial-prediction

tmleab

tmleAb: Targeted maximum likelihood estimation for antibody data

trichyanalysis

washb

washb: an internal R software package to facilitate and standardize intention-to-treat analyses in the WASH Benefits trials

washb-geopair

Code repository for Geographic pair matching in large-scale cluster randomized trials

washb-obs-san

Observational re-analysis of the effect of sanitation on LAZ in the control arms of the WASH Benefits trial

wbb-primary-outcomes

Scripts to conduct the data processing and analysis of adherence, primary outcomes (anthropometry, diarrhea), and all-cause mortality in the Bangladesh trial.