Comments (3)
Hi @ZON-ZONG-MIN,
Thanks for the report. We haven't had any other reports of issues with installing ABySS via conda, so I'm not too sure why you're seeing this error.
Just so we have all the information, could you provide the commands and full logs from each command that you ran (from creating the conda environment to installing ABySS, with the full log outputs)? Feel free to attach the log as a file here or use a gist if it's easier.
Thank you for your interest in ABySS!
Lauren
from abyss.
Conda environments come with some preinstalled packages, like a Python interpreter. It's possible that, for whatever reason, the Python version is incompatible with ABySS' dependencies. I'd inspect the installed packages in a fresh environment.
from abyss.
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your interest in ABySS!
from abyss.
Related Issues (20)
- Sealer --lower mode doesn't seal "gaps" with 1 lower case characters HOT 1
- Floating point exception on armhf and i386 HOT 7
- circular genome contigs not scaffolded properly HOT 4
- Estimate resource requirements for genome assembly with Abyss v2.2.5 HOT 46
- Abyss version update HOT 4
- contig histogram
- clarification re identity parameters HOT 2
- scaffolding with paired end short reads HOT 3
- abyss-overlap "Assertion `tend <= tseq.size' failed" HOT 7
- Highly Fragmented Assembly HOT 2
- Please add to README how to run tests HOT 4
- 'make check' fails: error: use of undeclared identifier 'EXPECT_DEATH' HOT 1
- Job using merged read pairs and unmerged read pairs gets killed HOT 5
- no abyss-pe.Makefile acess denied HOT 7
- Abyss 2.3.5 conda installed: pipeline stops at abyss-rresolver-short HOT 21
- run in conda HOT 3
- Build failure on macOS 12 and 13 HOT 9
- Build failure on Arch linux HOT 34
- Assertion failed HOT 13
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from abyss.