Name: BC Centre for Disease Control Public Health Laboratory
Type: Organization
Bio: The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.
Location: Vancouver, BC
Blog: www.bccdc.ca/publichealthlab
BC Centre for Disease Control Public Health Laboratory's Projects
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
A pipeline for running AMRfinderPlus and collating results into functional classes
Pipeline to make pairwise comparisons of matched fasta sequences.
Pipeline to perform alignment & variant calling on whole-genome sequence data
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Web app for visualizing pathogen evolution
Automated combining of fastq files from Oxford Nanopore sequencing runs
Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)
Automated symlinking of sequence data
Automated analysis of flu sequence data using BCCDC-PHL/fluviewer-nf
Automated genomic analysis of HCV sequence data
Automated Primary Sequence QC Checks for Illumina Sequencing Runs
Automated upload of sequence data to IRIDA platform
Automated uploading of sequence data into IRIDA instances, used in conjunction with auto-irida-azure-upload
Automated genomic analysis of SARS-CoV-2 sequence data
Automated lineage assignment of SARS-CoV-2 sequences with pangolin
Collect basic sequence QC metrics from nanopore reads
Generate some basic quality control statistics on an arbitrary set of illumina fastq sequence files.
Nextflow wrapper for biohansel
BLAST a set of fastq reads against a database
Align against a reference genome and call variants
Scripts to support clustering of cgMLST allele profiles