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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
Code samples from my blog
reusable, self-contained c++/cmake/boost infrastructure for quick bioinformatics development
Find all significant local alignments between reads
Long read to reference genome mapping tool
Module to determine where repeats are and make soft-masks of said
Alignment-based Scrubbing pipeline
The Dazzler Data Base
Bax File Decoder and Data Compressor
unofficial GIT tracking of the public release of DISCOVAR, whose repo has not been released
unofficial GIT tracking of the public release of DISCOVAR-denovo by Broad Institute's CRD team
Validate FastQ Files
Bayesian haplotype-based polymorphism discovery and genotyping.
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
A Java API for high-throughput sequencing data (HTS) formats.
C library for high-throughput sequencing data formats
Useful set of classes for creating statistical genetic programs.
LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Experimental tool to find approximate mapping positions between long sequences
Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Tools (written in C using htslib) for manipulating next-generation sequencing data
SeqAn's official repository.
Statsmodels: statistical modeling and econometrics in Python
A widget for running scripts in the Today View in OS X Yosemite's Notification Center
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Virtual Python Environment builder
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.