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agfusion

Python package to annotate and visualize gene fusions.

angular2-torrents

appyter-catalog

A catalog of appyter notebooks

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

awesome-r

A curated list of awesome R packages, frameworks and software.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bamcover

Plot graphs of read coverage for BAM files

capseg

CapSeg - Copy Number from Exome Sequencing

chanjo

Chanjo provides a better way to analyze coverage data in clinical sequencing.

chanjo-report

Report generator for Chanjo output

complexheatmap

Make Complex Heatmaps

condetri

Automatically exported from code.google.com/p/condetri

coursera

Repository Coursera "The Data Scientist's Toolbox"

cov.r

R script for generation coverage plots for BAM files

cpython

The Python programming language

ctat_humanfusionlib

data repo for fusions found in human genomes and transcriptomes

cutadapt

cutadapt removes adapter sequences from sequencing reads

datasciencecoursera

datasharing

The Leek group guide to data sharing

demeter2

Inference of gene dependency from RNAi screening datasets.

depmap-analysis

This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"

dre

Drug Response Evaluation

efficientr

Efficient R programming: a book

electron

:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS

electron-api-demos

Explore the Electron APIs

example-voting-app

Example Docker Compose app

exomecoverage

R script to plot coverage and calculate metrics from exome data

fusioninspector

FusionInspector code

gdc_tcga