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Hi there πŸ‘‹

I'm Ayush. On Github, I'm a systems engineer and computational biologist.

  • πŸ”­ I’m currently working on a large-scale systems design tool for biological systems ✨ Coming Soonβ„’ ✨
  • πŸ‘― I’m looking to collaborate on bioscrape for biological data analysis
  • πŸ“« How to reach me: electronic mail.
  • πŸ˜„ Pronouns: he/him

Ayush Pandey's Projects

atom icon atom

:atom: The hackable text editor

autoreduce icon autoreduce

Python based automated model reduction tool for SBML models

biocrnpyler icon biocrnpyler

A modular compiler for biological chemical reaction networks

bioscrape icon bioscrape

BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

bioscrape-edit icon bioscrape-edit

BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

biosimi icon biosimi

BioSIMI Modeling framework serving for input/output modeling of interconnected biomolecular systems

biosysdesign icon biosysdesign

Course Webpage for "Introduction to Biological System Design"

biosysid icon biosysid

Python toolbox for system identification of biological systems.

control_ratio_cells icon control_ratio_cells

Simulations for bioRxiv paper - Control of density and composition in an engineered two-member bacterial community

controlagv icon controlagv

Repo for control work in AGV. (agv-iit-kgp.github.io).

dacdenoising icon dacdenoising

Simulation of DAC noise and noise mitigation strategies

find-doa icon find-doa

Python based domain of attraction estimate for nonlinear dynamical systems

hvalidation icon hvalidation

Hierarchical validation for biological system modeling

ibike icon ibike

iBike related work. Open source reseearch on making bicycles run autonomously.

integrase-excisionase-characterization icon integrase-excisionase-characterization

Data and models repository for paper on "Characterization of integrase and excisionase activity in cell-free protein expression system using a modeling and analysis pipeline"

interlab-modeling icon interlab-modeling

Modeling of biological circuits developed in the interlab integration study of Build-A-Cell

loadcell icon loadcell

Instrumentation System Design for a Load Cell to measure weight

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