ayannawade Goto Github PK

2015

Public material for CS109

2019-march-bioinformatics-prerequisites

An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.

2020-advanced_single_cell_rna_seq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

2020-intro_single_cell_rna_seq

A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.

adam-blog

Adam Blog is a minimal clear theme for Jekyll

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

aws-research-workshops

This repo provides a managed SageMaker jupyter notebook with a number of notebooks for hands on workshops in data lakes, AI/ML, Batch, IoT, and Genomics.

ayannawade

ayannawade.github.io

Personal Website

bedtools2

bedtools - the swiss army knife for genome arithmetic

chipley.dev

Ripley adapted for ChIPseq analysis

course-content

Summer course content for Neuromatch Academy

find_peaks

A simple FDR peak caller

idr

IDR

infographic

Infographic

macs

MACS -- Model-based Analysis of ChIP-Seq

metaflow

Build and manage real-life data science projects with ease.

project-htmls

publications

Scripts used in published papers

pybkt

Python implementation of Bayesian Knowledge Tracing and extensions

ripley.pro

RNA-seq Pipeline

rna_browser

Used to analyze human (hg19) and mouse (mm9) RNA-seq gene counts.

tabpy

Execute Python code on the fly and display results in Tableau visualizations:

web-scraping-using-python

This project scrapes Wikipedia for its articles using BeautifulSoup to create a dataset and then draws analysis on the collected data.

whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level