Comments (1)
Hello,
Apologies about the delayed reply. "High B" is defined as a strong B compartment (-4) and "low B" is defined as a weak B compartment (-1). If your tumor is -4, it has stronger B compartmentalization ("high B) compared to your normal cell line.
With regard to the differential calling—thank you for pointing out the discrepancy. It seems that a small deprecated feature wasn't properly updated; the numbers should now match if you use the latest "diffcmp_pythonV.R" file in the GitHub.
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