Comments (3)
Hi,
What is the error you're getting with hasmap installation?
Did you try to install it through the command line?
$ R CMD INSTALL hashmap_0.2.2.tar.gz
For such cases, you can directly download the tar.gz file https://cran.r-project.org/src/contrib/bigstatsr_1.5.12.tar.gz and install it from the command line as -
$ R CMD INSTALL bigstatsr_1.5.12.tar.gz
Hopefully, this will resolve the issue unless bigstatr has other dependency issues. In that case, you probably need to install the packages one at a time or upgrade your R version.
Let me know how it goes.
from dchic.
Thanks for your reply. An additional question: Which R version do you recommend to use for installing all the packages?
Thanks
from dchic.
I have tested this in R 3.3.3, and R 4.0. I also don't think you will have any issues in between.
from dchic.
Related Issues (20)
- Support for other genomes: HOT 2
- error in hclust (--pcatype select) HOT 4
- Normalized counts or raw counts? HOT 2
- error: Two levels of parallelism are used. See `?assert_cores`. HOT 5
- `numberclust` parameter HOT 2
- Error: upper value must be greater than lower value Execution halted HOT 3
- How to extract compartment A/B information for each sample HOT 6
- pcOri values not matched between different conditions HOT 2
- running dhHiC on nf-core hic pipeline output file HOT 1
- cis interaction matrix and trans interaction matrix HOT 10
- Genome selection problem HOT 9
- dloop error HOT 6
- The difference between calculations for weighted center across replicates or samples HOT 6
- Error while installing functionsdchic HOT 4
- "IndexError: list index out of range" while using --pcatype fithic HOT 11
- Visualization HOT 12
- dcHIC --pcatype analyze: dim(X) must have a positive length HOT 2
- Small bug in utillities/preprocess.py + solution, 'chromosome not found in the file' error. HOT 2
- Error for trans HOT 8
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from dchic.