Comments (1)
Hi,
You can treat each validpair file as an independent replicate. For that you can create count.matrix_1 from validpair1 and matrix_2 from validpair2 using buildmatrix program separately. If you provide the replicates then dcHiC can utilize the intra-replicate variation present in your dataset. Concatenation is the next best option. Let us know how the result looks like and makes sense to you.
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Related Issues (20)
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