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bioconda-recipes

Conda recipes for the bioconda channel.

cell-health

Predicting Cell Health with Morphological Profiles

cell-health-data

Data processing for the Cell Painting data from the Cell Health experiments

cfret_data

Data processing for CFReT pilot images.

csc1-5931-hat-or-nohat

csci-5931-finalproject

DeepLearning Neural Network that classifies different types of cellular division states using image-based profiles

cytodata-faculty-search

Searching for faculty that conduct cell morphology research

cytodata.github.io

CytoData Society website

cytosnake

cytosnake-benchmarks

CytoSnake benchmarks

cytotable

Transform data for processing image-based profiling readouts with Pycytominer.

cytotoxic-nuisance-metadata-analysis

Metadata search within the Cytotoxic and Nuisance Metadata

cytotrajectory

CytoTrajectory: Drug Screening Trajectory Tracking with Image-based Profile Interpretability using Variational Auto Encoders (VAEs)

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

genequest

De Novo gene searching algorithm using De Bruijn graphs

jump-single-cell

Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

macrophage-striation-analysis

Analysis repository understanding striation patterns in macrophages.

mitocheck-map-analysis

Utilizing the mean average precision (MAP) metric to assess reproducibility and perturbation effect on single-cell profiles in the MitoCheck dataset.

mitocheck_data

All information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).

nf1-map-analysis

Applying mean average precision to NF1 image-base profiles

nf1_cellpainting_data

This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

pycytominer

cytominer python package

simulated_data_test

simunet

Assignment 4

single_cell_normalization

smartdada2

speechgpt

💬 SpeechGPT is a web application that enables you to converse with ChatGPT.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

vseek

Virome Characterization tool