aswarren Goto Github PK

app_service

Application execution service.

asw_learn

For teaching git

aswarren.github.io

aswarren site

batch-fasta-interpro

Run interproscan on a multi-sequence fasta file via EBI webservices.

bionetworks-1

Models and code for bionetworks synethesis

biopython

Official git repository for Biopython (converted from CVS)

bvbrc_grab_features

Given genome ids get the associated protein features using the BVBRC API

bvbrc_metacats

bvbrc_rnaseq

bvbrc_website

Repository for the BV-BRC website.

clustertracker_va

Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.

cufflinks

gengraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

gexf-js

A JavaScript GEXF viewer

gexfd3

A small library for rendering parsed GEXF graphs in D3.js

gffutils

GFF and GTF file manipulation and interconversion

go-site

A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

goatools

Python scripts to find enrichment of GO terms

gogranny

A python library for representing and using the Gene Ontology

gpaa_capstone

grc

The Genome Reverse Compiler (GRC) is an automated annotation tool designed for prokaryotic genomes.

gtf-to-operon

Combines existing annotation with GTF Transcript assembly by Cufflinks.

jbrowse

A modern genome browser built with JavaScript and HTML5.

matplotlib

matplotlib: plotting with Python

msa

Modular BioJS compoment for a multiple sequence alignment

msa-test

Simple html page for testing side by side msa tree. Needs biojs: msa, msa-tnt, and biojs-io-newick

msa-tree

A modular combination of MSA viewer and phylogenetic tree viewer

my_python

ncov-clades-schema

Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

node-xattr

Native Node Module to get/set extended filesystem attributes