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ampliconarchitect

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.

awesome-blogdown

An awesome curated list of blogs built using blogdown

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

baidupcs-go

百度网盘客户端 - Go语言编写

beautiful-jekyll

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

bypass-paywalls-chrome

Bypass Paywalls web browser extension for Chrome and Firefox.

cv

My CV built using RMarkdown and the pagedown package.

fusen

Inflate your package from a simple flat Rmd

gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gitskills

hic_tools

A collection of tools for Hi-C data analysis

li_et_al_2024

LINE-1 transcription activates long-range gene expression

nextflow

A DSL for data-driven computational pipelines

ngs-tutorial

NGS Tutorial

pydata-notebook

利用Python进行数据分析 第二版 (2017) 中文翻译笔记

resume

个人中文简历 Latex 源码 https://hijiangtao.github.io/

rmote

Utilities for running R on a remote server

speedseq

A flexible framework for rapid genome analysis and interpretation

starter-hugo-academic

thu-ppt-theme

清华主题PPT模板

tidytuesday

Code and plots for submissions to the #tidytuesday challenge

youdaotranslator

Alfred Youdao Translate Workflow

zshguide

Zsh 开发指南