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agat

Another Gff Analysis Toolkit

alvis-intro

Introduction slides for Alvis

avataaars-generator

Simple generator React app for avataaars

besst

BESST - scaffolder for genomic assemblies

bioseq-js

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

conda_r_skeleton_helper

Cleaning up Conda r-packages

cookiecutter

csn.r

Attempt to convert https://github.com/wys8c764/CSN from Matlab to R

data-science-at-the-command-line

Data Science at the Command Line

docker

docker-munin-server

Dockerization of a munin server behind nginx

fake-cam

A Python app and Docker image for webcam stream manipulation

forking-workflow-exercise

genepy

GenePy v1.2 a score for the analysis of next generation sequencing data

ghci_test

Testing environment for github actions / workflows / CI

git-aware-prompt

Display current Git branch name and stats in your terminal prompt when in a Git working directory.

gwas

Scripts for GWAS association and metaanalysis

home

settings

hovercraft

A tool to make impress.js presentations from reStructuredText

hubot-slack-github-issues

Hubot script using the Slack Real Time Messaging and Web APIs to file GitHub issues

pp-cr-testing

Testing CI on Coderefinery Workshop

progressr

三 R package: An Inclusive, Unifying API for Progress Updates

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

singularity

Singularity receipts

snakefmt

The uncompromising Snakemake code formatter

snakemake-parallel-bwa

A Snakefile to parallelize bwa.

snakemake-workflows

An experimental repo for common snakemake rules and workflows

snakemakelib

Snakemake library for bioinformatics programs, with a focus on next-generation sequencing

snakeparse

Making Snakemake workflows into full-fledged command line tools since 1999.