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aaconservation

A library for calculating Amino Acid conservation in sequence alignment

aamtool

Perform Atom Atom Mapping (AAM) on a balanced biochemical reaction.

activity-recognition-with-cnn-and-rnn

Temporal Segments LSTM and Temporal-Inception for Activity Recognition

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

basset

Convolutional neural network analysis for predicting DNA sequence activity.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

beam

SMILES Toolkit

benchmark

Substructure code benchmarking

bert

TensorFlow code and pre-trained models for BERT

bitap

Implementations of Bitap-related string-search algorithms

cas-offinder

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

cdk

The Chemistry Development Kit

cdkhashfingerprint

Improvised CDK Hashed fingerprint

centres

Perception and labelling of stereogenic centres in chemical structures

chart.js

Simple HTML5 Charts using the <canvas> tag

chemblast

Find similar molecules using Sequence BLAST algorithm

complete-striped-smith-waterman-library

cpr

Clustering and PageRank

crispranalyzer

CRISPR-analyzer

crnn-keras

CRNN (CNN+RNN) for OCR using Keras / License Plate Recognition

datasciencecoursera

data science coursera

deep_learning_examples

Examples of using deep learning in Bioinformatics

deepfam

Deep learning based alignment-free method for protein family modeling and prediction

deeplearn

Implementation of research papers on Deep Learning+ NLP+ CV in Python using Keras, Tensorflow and Scikit Learn.

deeplearning-biology

A list of deep learning implementations in biology

deeplearning4j

Deep Learning for Java, Scala & Clojure on Hadoop, Spark & GPUs

deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

diamond

Accelerated BLAST compatible local sequence aligner.

dsol_rv0.2

deep protein solubility prediction