Comments (5)
jts
commented on August 16, 2024
I opened a PR in artic-tools to fix this (linked above) - would be good to get this merged in and new conda versions built
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will-rowe
commented on August 16, 2024
Thanks @jts and sorry for the delay! Looks good to me. I'll make a new artic-tools release and bump the conda version.
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rdeborja
commented on August 16, 2024
@will-rowe thanks for merging and updating the release version. Will the conda version be updated as well (currently at 0.3.0).
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will-rowe
commented on August 16, 2024
I'll get on this now - I had hoped for an automatic bump but nm!
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will-rowe
commented on August 16, 2024
Sorry for the delay here - some issues getting it into conda. I'm quite busy atm so will have to look at this over the weekend/next week.
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Related Issues (20)
- artic pipeline not installing properly: ModuleNotFoundError: No module named 'importlib.metadata' HOT 1
- Longshot `thread 'main' panicked at 'assertion failed: p <= 0.0'` error: possible to update longshot? HOT 3
- vcf_filter.py filtering parameters and align_trim.py for alternative primer scheme
- Error with medaka consensus HOT 1
- Unable to install artic on mac
- artic_vcf_merge Fails HOT 2
- What is the default mindepth ? HOT 4
- pipeline has stopped working...! HOT 5
- Conda recipe for 1.2.3 not working HOT 8
- no version information available (required by samtools) HOT 5
- Overlapping variants in fail.vcf and pass.vcf cause preconsensus to be masked and thus bcftools complains when applying the "pass" variant HOT 2
- Artic v5 mismatched primer names in bedfile causes "dropped" amplicons HOT 1
- Update medaka version HOT 2
- KeyError: 'SupportFraction' when running margin_cons.py
- Clarify what's meant by 'Suppress variant'
- Conda environment set up HOT 3
- Custom bed file with "primer gaps" causes workflow to crash at artic-tools vcf_checker step HOT 1
- Error: bcftools consensus fail with overlapping variants HOT 5
- htslib =1.17 dependency PLEASE UPDATE HOT 1
- PyVCF assigns a QUAL value of '.' instead of zero
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