Comments (2)
Did you make a 23andme_v5_ht19_ref.txt.gz
reference? I've included a v3 and v4. It's possible that leaving indels in a new reference would fail in that way, but I wouldn't expect it to get so far before encountering it's first indel.
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Related Issues (15)
- Add In/Del support
- New reference HOT 5
- Tried to use it, but the output file doesn't contain any rows below the static headers for the .vcf file? HOT 3
- List of Steps to Convert 23andme.txt to VCF HOT 3
- MT reference incorrect HOT 2
- 23andMe Changed their columns
- V5 Chip HOT 3
- 23andMe SNPs have been updated HOT 4
- hg18 reference HOT 1
- b36? HOT 1
- Use gunzip -c rather than zcat for OS X HOT 2
- Warnings for "use of uninitialized value" lines 164-170 HOT 15
- Upgrade to VCF4.2? HOT 2
- No Licensing Data HOT 3
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