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Aaron Quinlan's Projects

poretools icon poretools

a toolkit for working with Oxford nanopore data

pybedtools icon pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pyd4 icon pyd4

The python binding for D4 format

python-giggle icon python-giggle

python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.

pyvcf icon pyvcf

A Variant Call Format reader for Python.

samplot icon samplot

Plot structural variant signals from many BAMs and CRAMs

scurgen icon scurgen

A tool for detecting patterns in genomic data with space filling curves

sketch icon sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

vcfanno icon vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

vcflib icon vcflib

a simple C++ library for parsing and manipulating VCF files

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