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examples icon examples

Fortran and Python examples to accompany the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. Tildesley (2nd edition, Oxford University Press, 2017). Use the "Clone or download" button, or follow the "...releases" link below.

jax-md icon jax-md

Differentiable, Hardware Accelerated, Molecular Dynamics

jax-reaxff icon jax-reaxff

JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields

lammps icon lammps

Public development project of the LAMMPS MD software package

lammps-packages icon lammps-packages

Scripts, tools, documentation and supporting libraries and files for building pre-compiled LAMMPS packages

mdgrad icon mdgrad

Pytorch differentiable molecular dynamics

minimd icon minimd

MiniMD Molecular Dynamics Mini-App

modules icon modules

Environment Modules: provides dynamic modification of a user's environment

networkx icon networkx

Official NetworkX source code repository.

openblas icon openblas

OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

rbtray icon rbtray

A fork of RBTray from http://sourceforge.net/p/rbtray/code/.

topotools icon topotools

VMD plugin for manipulating topology information

torchdiffeq icon torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

zotero icon zotero

Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources.

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