Comments (5)
It also seems to affect photobiologyInOut
:
# photobiologyInOut
<details>
* Version: 0.4.23
* GitHub: https://github.com/aphalo/photobiologyinout
* Source code: https://github.com/cran/photobiologyInOut
* Date/Publication: 2021-10-11 04:10:01 UTC
* Number of recursive dependencies: 117
Run `cloud_details(, "photobiologyInOut")` for more info
</details>
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘photobiologyInOut-Ex.R’ failed
The error most likely occurred in:
> ### Name: colorSpec2mspct
> ### Title: Convert 'colorSpec::colorSpec' objects
> ### Aliases: colorSpec2mspct as.source_spct.colorSpec
> ### as.source_mspct.colorSpec as.response_spct.colorSpec
> ### as.response_mspct.colorSpec as.filter_spct.colorSpec
> ### as.filter_mspct.colorSpec as.reflector_spct.colorSpec
> ### as.reflector_mspct.colorSpec as.chroma_mspct.colorSpec colorSpec2spct
...
The following object is masked from ‘package:photobiology’:
normalize
Object: source_spct [93 x 2]
Wavelength range 320 to 780 nm, step 5 nm
Time unit 1s
Error: 'trunc_mat' is not an exported object from 'namespace:dplyr'
Execution halted
```
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
--- re-building ‘user-guide.Rmd’ using rmarkdown
News at https://www.r4photobiology.info/
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
...
Quitting from lines 525-530 (user-guide.Rmd)
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
'trunc_mat' is not an exported object from 'namespace:dplyr'
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespace in Imports field not imported from: ‘lazyeval’
All declared Imports should be used.
```
from photobiology.
@romainfrancois It was easy enough in this case to remove the only call to trunc_mat()
in package 'photobiology'. I have pushed the fix to GitHub. (The error in 'photobiologyInOut' was in a call to the same function from 'photobiology'.) When do you plan to submit 'dplyr' 1.0.8 to CRAN? How much time do I have to address other issues before submitting 'photobiology' to CRAN?
from photobiology.
Probably this week, or early next week.
from photobiology.
o.k., I will leave other changes for the next release.
Thanks!
from photobiology.
'photobiology' 0.1.9' has passed CRAN checks and is now on its way to CRAN
from photobiology.
Related Issues (15)
- Add mathematical equations to documentation HOT 1
- Use 'poorman' and plain R instead of 'dplyr' and 'tidyr'. HOT 2
- Unnesting of spectra within mspct objects HOT 1
- Interpolate wls to make members of a collection consistent HOT 3
- Spectral irradiance ratios HOT 1
- Handling normalizations in filter_spct qty conversions HOT 3
- wave_number(), wave_frequency() and photon_energy() HOT 1
- Implement GOFF-GRATCH FORMULATIONS for water vapour
- RGB colours for non-human vision on RGB monitors
- A more elegant way of handling molar cross sections vs absorption spectra is needed HOT 4
- Corruption of a single pixel at each end of a spectrum HOT 1
- sunrise_time does not update time value for requested time zone HOT 6
- More informative summary() for collections of spectra HOT 1
- Bug in extract with negative indexes HOT 1
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from photobiology.