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ablang

AbLang: A language model for antibodies

amazon-genomics-cli

amazon-sagemaker-examples

Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

amazon-sagemaker-immersion-day

anemone

Associated scripts and data for the sea anemone RNA-seq paper

battlezonex

A desktop game similar to Angry Birds built using C++ in 2004

cancer-subtype-classification

Correlational clustering approach to finding biomarkers of cancer which can be used for genotyping in later studies using simpler technologies such as microarrays.

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

clinical-trial-analytics

A dashboard for clinical trial analytics

cnidaria

Associated scripts and data for paper on cnidaria genome analysis

coalescent_basic

A basic coalescent process simulation. Biology, a coalescent process simulates an evolutionary process with different forces. Mathematically, a coalescent process is a backward time Markov Chain.

comparative_genomics

A tool to compare genomes of different animals and populations using protein coding genes

diffab

✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)

dlab-public

Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"

dplyr

dplyr: A grammar of data manipulation

filter-vcf

A notebook demonstrating different ways to filter VCF files.

fisher-wright

A simulation for the Fisher-Wright model in evolutionary biology

fractals-software

A software to explore fractal types built in Java

git

SWC workshop

git-collaboration

A repository to demonstrate collaboration workflows

git-novice

Software Carpentry introduction to Git for novices.

hodgkin-huxley

a web-based simulation of the Hodgkin-Huxley models in neuroscience

imgthla

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

instructor-training

Software and Data Carpentry instructor training course material

keras

R Interface to Keras

libmolgrid

Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows

lokta-volterra

A shiny app to model the Lokta Volterra Equations

lorentz-simulator

Simple simulation of the Lorentz equations

manuscript_insilico_antibody_generation

marinefish

Associated scripts and data for paper on Marine fish transcriptome