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antoinepassemiers

Config files for my GitHub profile.

archmm

A Cython Machine Learning library dedicated to Hidden Markov Models

beyond-gradient-descent

Minimalist deep learning library with first and second-order optimization algorithms made for educational purpose

bitonic-sort

Sorting arbitrary sequences using a bitonic sort algorithm distributed with MPI

celfie

cfDNA cell type of origin estimation

chip-seq-peak-caller

Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data

cython-project-template

Ready-to-use and simple Cython template for long-term projects (with NumPy support)

cythrinsic

Header files for allowing Intel intrinsics in Cython

encoder-forest

eForest: Reversible mapping between high-dimensional data and path rule identifiers using trees embedding

feature-selection-benchmark

Official source code for the paper "How good are neural network feature selection methods in detecting non-linear signals? A quantitative benchmark."

gde-gaussfold

Lightning-Fast Template-free Protein Folding based on Predicted Residue Contacts and Secondary Structure

gradis

Assessing the robustness of the results presented in "Supervised learning of gene regulatory networks based on graph distance profile of transcriptomics data"

jerry-the-race-car-driver

He drives so goddamn fast!

learning-chaos

lexicon-based-sentiment-analysis

Lexicon-based sentiment analysis inspired by Syuzhet R package

master-thesis

Master Thesis on Protein Contact Prediction

mkp

Heuristic Solver for the Multidimensional Knapsack Problem

mmo-torch

Matrix Manifold Optimization with PyTorch

motionlens

Sending mobile sensory data to a server as binary data

neuhon

Musical key detection library & Bachelor thesis on key detection

nih-eeg

[Kaggle] HMM-based application for predicting seizures from intracranial EEG recordings

open-challenges-single-cell-perturbations

20th solution for Kaggle's competition "Open Problems – Single-Cell Perturbations"

oriana

Variational Inference library for Probabilistic Count Matrix Factorization (pCMF) and single-cell expression data analysis

p-center-problem

Solving P-Center Problem using P1 and P3 formulations

pfsp-wt

Heuristic solver based on Ant Colony Optimization and designed for the Permutation Flow Shop Scheduling Problem with Weighted Tardiness (PFSP-WT)

portia

A Lightning-fast algorithm for Gene Regulatory Network inference from gene expression data

portia-manuscript

Source code for the paper "Fast and Accurate Inference of Gene Regulatory Networks through Robust Precision Matrix Estimation", by Passemiers et al.

realistic-mouse

Realistic mouse movements for building click bots

recursive-least-squares-algorithm-with-kafka-and-spark

Remote repository for the INFO-H-515 Big data project (phase 2)

scythe

Deep learning library based on the gcForest algorithm