anpefi Goto Github PK

actionstest

Test for actions

agalma-modules

My own collection of agalma modules. Agalma (https://bitbucket.org/caseywdunn/agalma) is a set of analysis pipelines for phylogenomic analyses developed by the Dunn Lab at Brown University.

anpefi.github.io

my personal website at

anpefi.source

Source files for the website in anpefi.github.io

anpefir

My personal collection of miscellaneous R functions wrapped in a package

bioinf-python

Python for Bioinformatics

bison2012

Code and config files for the simulations performed in the 2012 Biol Cons paper: http://dx.doi.org/10.1016/j.biocon.2012.02.022

datasciencecoursera

Repo for the Coursera's specialization on Data Science

datasharing

The Leek group guide to data sharing

ddp-w4-project

repo for the Peer-graded Assignment: Course Project: Shiny Application and Reproducible Pitch

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

getting-and-cleaning-data-course-project

mibm-genomica-marina

Repo (In Spanish) for the Master Course: Genomica Marina

misc-r-tools

Repository for multiple and miscellaneous tools and scripts in R

msap

The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

myconfigs

This is my personal collection of miscellaneous configuration files

pandoc-templates

Templates for pandoc

pnps_sims

quantiself

A lifelogging project

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

rslides

Slideshows made with R/Slidify to be shared

rtumopp

🦀 R interface to tumopp. This fork is my own copy to use igraph instead of igraphlite, as this was giving me installation problems

sc-mtdna

Reproducible reports for the paper entittled: Single-cell mtDNA heteroplasmy in colorectal cancer

shinymanager

Simple and secure authentification mechanism for single shiny applications.

slides-seminar-ibmsims

This is a slide presentation I give as a lab seminar about Individual Based Simulations in population genetics and Cancer (22/04/2016). Written in Markdown using reveal-ck framework

tumopp

Tumor growth simulation in C++

vilas_et_al.15

Scripts and parameter files for the simulation analyses showed in the paper: Vilas et al. (2015), http://dx.doi.org/10.1111/mec.13334