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Atgenomix's Projects

adam icon adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

aztk-backup icon aztk-backup

AZTK powered by Azure Batch: On-demand, Dockerized, Spark Jobs on Azure

bdg-formats icon bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

console-icons icon console-icons

Repository for graphics used on the SeqsLab management console home page (https://console.seqslab.net/)

cromwell icon cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

deepvariant icon deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

docs-ui icon docs-ui

Customized UI bundle for the Antora documentation site

hdfscontents icon hdfscontents

A HDFS-backed ContentsManager implementation for IPython

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

pydoop icon pydoop

A Python MapReduce and HDFS API for Hadoop

sga icon sga

de novo sequence assembler using string graphs

svaba icon svaba

Structural variation and indel detection by local assembly

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

utils icon utils

General (non-omics) code used across BDG products. Apache 2 licensed.

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