andyyhchen Goto Github PK

10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

advml

repository for coursera course "advanced machine learning"

andyyhchen.github.io

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

awesome-nextflow

A curated list of nextflow based pipelines

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chraccr

Analyzing chromatin accessibility data in R

coursera-cpp

cp-codes

dnamicroarrayimpute

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

hic_data

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

hic_tools

A collection of tools for Hi-C data analysis

lab_2021

Repository for all the labs for Spring 2021

marge

API for HOMER in R for Genomic Analysis using Tidy Conventions

mpraflow-satpathy

A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

mustache

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

nand2teris

repository for coursera course "From NAND to Teris"

pyflow-atacseq

ATAC-seq snakemake pipeline

rsd-engineeringcourse

Materials for Turing's Research Software Engineering course

scrna-seq_notes

A list of scRNA-seq analysis tools

scrnaseq-analysis-notes

scRNAseq analysis notes from Ming Tang

sketchat

The project of online discussion room

slurm-examples

examples of using slurm in life sciences workflows using posix file systems and object storage

time-series-predict

Predict power meter usage using seq2seq model