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Hi! I'm Andrew. I'm a Professor of Bioinformatics and Computational Biology at University College London. My group develops software to analyze protein sequence and structure - in particular, we have an interest in antibodies (and their use as therapeutics) and in the effects of mutations on protein sequence and structure.

In this repository, you will find a number of personal projects - either work things that only I work on, or some more off-topic things.

You can also visit our group account at https://github.com/ACRMGroup/ and our web pages at http://www.bioinf.org.uk/

Andrew Martin's Projects

absplit icon absplit

Code to split an antibody PDB file into Fv fragments with their antigens

acaca icon acaca

Canonical assignment code from our 1996 paper [PMID: 8947577]

amplot icon amplot

AMPlot - a graph plotting program, originally for the Amiga, but also with a command line interface for Unix

ansi icon ansi

Convert between K&R and ANSI C and create prototypes

backup icon backup

A flexible backup script using rsync

batcher icon batcher

A simple language for producing repetitive files

bib2html icon bib2html

Simple BibTeX to HTML converted. No style files, Just edit the Perl to change the style

biocomp2 icon biocomp2

Skeleton code for Birkbeck Biocomputing II

bootify icon bootify

A script to generate bootstrap HTML pages from a single HTML file containing metatag markup

cadb icon cadb

Create and search a loop database

carcons icon carcons

Scoring conservation through allowed residues

chrootperl icon chrootperl

This is a wrapper to create a chroot sandboxed perl together with an example website that uses it to teach perl programming.

cleanvbase2 icon cleanvbase2

Code for cleaning up the VBase2 FASTA files and extracting subsets

cluster icon cluster

Clustering code implementing a number of different algorithms

clusterlib icon clusterlib

Work in progress - clustering library and sample program

csearch icon csearch

CSearch code extracted from CONGEN (by Bob Bruccoleri) by me in around 1990 on the basis that it should be released freely

datarot icon datarot

Rotates an xy dataset such that the best fit line fits along the x=y axis

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