Andrew Martin's Projects
Code to split an antibody PDB file into Fv fragments with their antigens
Bulk antibody sequence annotation
Canonical assignment code from our 1996 paper [PMID: 8947577]
Assign germline
AMPlot - a graph plotting program, originally for the Amiga, but also with a command line interface for Unix
Convert between K&R and ANSI C and create prototypes
A flexible backup script using rsync
A simple language for producing repetitive files
Simple BibTeX to HTML converted. No style files, Just edit the Perl to change the style
opening/searching large big files
Skeleton code for Birkbeck Biocomputing II
Generally useful Bioinformatics scripts
A script to generate bootstrap HTML pages from a single HTML file containing metatag markup
Create and search a loop database
Scoring conservation through allowed residues
Version of pdbtorsions to calculate phi, psi, omega angles in cellulose
Assign Chothia canonical classes
This is a wrapper to create a chroot sandboxed perl together with an example website that uses it to teach perl programming.
Code for cleaning up the VBase2 FASTA files and extracting subsets
Clustering code implementing a number of different algorithms
Work in progress - clustering library and sample program
Utilities for use with Bob Bruccoleri's CONGEN
CSearch code extracted from CONGEN (by Bob Bruccoleri) by me in around 1990 on the basis that it should be released freely
Rotates an xy dataset such that the best fit line fits along the x=y axis