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caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

cellsort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

cmtk_matlab_wrapper

Matlab functions to interphase with CMTK toolbox

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

coding-problems

Solutions for various coding/algorithmic problems and many useful resources for learning algorithms and data structures

constrained-foopsi

Implementation of the constrained deconvolution spike inference algorithm in Matlab

flycaiman

Calcium Imaging Processing Pipeline of 3D time series

git-tutorial

Workshop at CCU for learning git

interactive-coding-challenges

120+ interactive Python coding interview challenges (algorithms and data structures). Includes Anki flashcards.

neural_decoding

A python package that includes many methods for decoding neural activity

neuroglm

Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).

normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

notboxplot

plots things that are not boxplots

oasis

Deconvolution of calcium imaging data

oasis_matlab

python-interview-questions

300+ Python Interview Questions

python-programming-exercises

100+ Python challenging programming exercises

suite2p

Tools for processing 2P recordings

test-website

Test website creation at 2017 Students' Retreat

toolbox-romano-et-al

Computational toolbox for analysis of calcium imaging data of neuronal populations

unicorn-index

Introducing a new way to define player uniqueness