amunzur Goto Github PK

bioinfo_pipeline

Bioinformatics pipeline for QC, alignment, variant calling and visualization of NGS data.

bioinformatics-resources

Useful scripts and tools I gathered to help with onboarding to bioinformatics analysis from the command line

chip_project

Looking for clonal hematopoiesis of indeterminate potential (CHIP) mutations in ctDNA data from targeted sequencing and WGS

cpsc330

CPSC 330: Applied Machine Learning

dash

Fork of the DASH project

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

essa_project

Code repository for the analysis and visualization of the ESSA data

hla_pipeline

igem_2021_project

ind232_project

javascript-exercises

javascript30

30 Day Vanilla JS Challenge

m1rp

Code repository for the M1RP Ghent Collaboration

methylation_analysis

microbial_diversity_of_the_saanich_inlet

A bioinformatics study for the MICB 405 course at UBC

mt-ctdna_analysis

The analysis of mitochondrial ctDNA from whole genome sequencing data

plasma_chipseq

Code for plasma chip sequencing project

speciationwithdominance

A simulation study in python to understand speciation dynamics